One Codex
One Codex provides a web-based platform for microbiome sequencing and analysis, enabling researchers to go from raw sequence data to taxonomic and functional results in minutes. The platform combines the world's largest microbial reference database with drag-and-drop sample upload, built-in Jupyter Notebooks for custom analyses, and reproducible reporting for scalable research workflows.
- Biotechnology
- Data & Analytics
- Healthcare Technology
- Software Only
Funding
Funding not disclosed
Founders
Founder details are not available yet.
Product
Problem
Microbiome research and diagnostics require analyzing complex metagenomic samples to identify which microbes are present and what they are doing, but existing workflows are often slow, irreproducible, and difficult to scale. Researchers face challenges with batch effects, inconsistent analysis pipelines, and the need for specialized computational expertise to interpret large sequencing datasets.
Solution
One Codex provides a fast, easy-to-use web platform for microbiome sequencing and analysis that takes users from sample to results in minutes. The platform leverages the world's largest microbial reference database and advanced classification algorithms to deliver accurate taxonomic and functional analysis of shotgun and amplicon sequencing data. Users can drag and drop sequence data into the browser, receive comprehensive results quickly, and manage samples at scale—from a single sample to millions. Built-in Jupyter Notebooks enable sophisticated custom analyses without requiring users to manage infrastructure, and sharing features allow collaboration directly with colleagues. The platform is designed to be accessible to both bench scientists and computational biologists, while supporting reproducibility through consistent, automated pipelines.
Target Audience
Primary customers include academic research labs, biotechnology companies developing live biotherapeutics (LBPs), and clinical laboratories performing infectious disease diagnostics.
Features
- Shotgun metagenomic and amplicon taxonomic classification with species-level resolution and strain tracking across samples
- Functional prediction through targeted panels, including antimicrobial resistance (AMR) marker detection
- Built-in Jupyter Notebooks for scalable custom analyses without infrastructure management
- Drag-and-drop sample upload with results delivered in minutes
- Sharing and collaboration features with reproducible report generation in PDF, Excel, and other formats
- Integrations with Illumina BaseSpace and APIs for programmatic data access
- Secure, GxP- and HIPAA-compliant infrastructure designed for regulated environments
- Partner products including CE-IVD microbiome profiling kits, ATCC microbiome standards, and respiratory virus research panels